Phylogenetic Analysis of ALV-J Associated with Immune Responses in Yellow Chicken Flocks in South China

Table 4

The nucleotide and amino acid identity shared between GD19GZ01 and the other reference strains.

ALV strains	Nucleotide sequences (%)					Amino acid sequences (%)
	Whole genome	LTR	Gag	Pol	Env	Gag	Pol	Env
GD19GZ02	97.8	93.7	98.1	98.8	96.0	97.7	99.4	92.6
GD19GZ03	95.8	93.0	96.3	97.3	94.0	97.4	98.4	91.4
GD19GZ04	96.3	97.4	96.5	98.0	95.3	97.4	98.6	92.2
RAV-1	85.6	86.5	96.2	97.1	56.5	97.0	97.7	47.8
2015012	86.8	93.9	95.2	97.1	57.4	96.7	98.3	48.2
SDAU09C2	86.0	95.0	96.6	96.8	57.2	97.7	98.6	48.8
FJ15TH0	86.0	90.7	95.3	97.7	57.6	97.0	98.5	48.8
DL00766	85.1	65.7	96.2	98.5	56.7	97.6	99.0	47.2
RAV0	85.1	63.5	96.7	98.3	56.5	97.4	98.7	48.3
AF227	85.2	64.6	96.6	98.5	56.6	97.9	98.7	48.3
AF229	85.2	64.6	96.7	98.5	56,6	97.9	98.7	48.1
JS11C1	85.2	79.7	94.6	97.9	57.7	96.2	98.4	47.9
JS13LY19	85.3	63.8	96.7	98.3	57.2	98.0	98.6	47.6
HPRS-103	94.7	92.7	96.0	97.3	93.7	96.7	98.6	90.5
SCAU-HN06	95.2	89.5	95.3	97.8	93.7	96.9	99.0	91.9
PDRC-59831	94.7	90.4	94.9	96.8	93.3	96.2	98.3	88.9
TW-3593	85.2	66.1	96.4	98.1	57.0	97.6	98.7	47.6
HLJ09MDJ-1	95.4	86.9	96.3	97.4	95.0	96.7	98.5	92.0
JL093-1	95.4	87.2	96.3	97.5	94.6	96.9	98.5	92.4
JL09L01	94.6	90.4	96.8	97.1	90.0	97.4	97.5	87.7
YZ9902	94.3	92.3	95.0	97.0	93.7	95.9	98.4	89.4
GD1109	95.3	90.4	95.3	98.0	94.9	97.0	98.7	92.3
GDKP1202	95.9	93.0	96.6	96.8	95.1	98.1	98.9	92.8
GifN_001	85.6	89.9	95.3	97.7	56.7	97.0	98.5	49.5
M180	96.2	94.6	96.5	97.4	95.1	97.6	98.9	91.7
K243	95.9	94.2	96.2	97.4	94.0	97.2	98.7	90.4
GDHN-YM1	97.1	97.4	97.4	97.8	95.5	97.3	99.0	93.5
GDHN-YM2	98.0	99.0	97.5	98.7	96.8	97.6	99.3	93.7
SDAU1703	94.9	89.5	96.3	97.3	93.0	96.9	98.5	90.5