Identification of circRNA Expression Profiles in BMSCs from Glucocorticoid-Induced Osteoporosis Model
Table 1
The differentially expressed circRNAs ranked by their RNA-seq results.
circRNA ID
circRNA type
Locus
value
Log2 FC
Upregulated circRNAs
chr1:232138805-232148068+
Sense overlapping
chr1
7.5470
chr5:79444533-79448528-
Exonic
chr5
0.0206
5.6229
circARSB
Exonic
chr2
0.0366
5.3489
circAKT3
Exonic
chr13
0.0437
5.2632
chr3:111563809-111567731+
Exonic
chr3
0.0470
5.2259
chr2:207700606-207729912+
Exonic
chr2
0.0497
5.1965
chr6:137274621-137292892+
Sense overlapping
chr6
0.0011
2.6235
Downregulated circRNAs
chr5:21834978-21835133-
Sense overlapping
chr5
0.0196
-5.5534
chr19:50369748-50371831+
Intergenic
chr19
0.023867
-5.46765
chr9:88377072-88400815+
Exonic
chr9
0.0246
-5.4527
chr1:228117553-228117771-
Intergenic
chr1
0.0281
-5.3943
circTRPM7
Exonic
chr3
0.0303
-5.3608
chr14:43212130-43221970+
Exonic
chr14
0.0328
-5.3251
circPTEN
Exonic
chr1
0.0436
-5.1899
chr1:181594948-181599334-
Exonic
chr1
0.0491
-5.1317
chr1:255194723-255196140-
Exonic
chr1
0.0392
-3.4921
chr1:232142345-232145992+
Sense overlapping
chr1
0.0247
-1.7518
Note: circRNA ID: the circRNA ID found in circBase (http://circbase.mdc-berlin.de). circRNA type: circRNAs were classified into five types: “exonic,” “intronic,” “antisense,” “intragenic,” and “intergenic.” value: value was calculated from paired -test. FDR: FDR was calculated from Benjamini-Hochberg FDR. Fold change: the absolute ratio (no log scale) of normalized intensities between the two conditions.
